- Home
- Search Results
- Page 1 of 1
Search for: All records
- 
                                    Total Resources3
- Resource Type
- 
                                    
                                    
                                    
                                    0000000003000000
- More
- Availability
- 
                                    
                                    30
- Author / Contributor
- Filter by Author / Creator
- 
                                    
                                        - 
                                                    
                                                        
                                                            
                                                            Arora, Sanjeevani (3)
- 
                                                    
                                                        
                                                            
                                                            Demidova, Elena V. (2)
- 
                                                    
                                                        
                                                            
                                                            Rosen, Gail L. (2)
- 
                                                    
                                                        
                                                            
                                                            Andrake, Mark D. (1)
- 
                                                    
                                                        
                                                            
                                                            Chen, David Y. (1)
- 
                                                    
                                                        
                                                            
                                                            Daly, Mary B. (1)
- 
                                                    
                                                        
                                                            
                                                            Dunbrack, Roland L. (1)
- 
                                                    
                                                        
                                                            
                                                            Golemis, Erica A. (1)
- 
                                                    
                                                        
                                                            
                                                            Hall, Michael J. (1)
- 
                                                    
                                                        
                                                            
                                                            Hartman, Tiffiney R. (1)
- 
                                                    
                                                        
                                                            
                                                            Iqbal, Waleed (1)
- 
                                                    
                                                        
                                                            
                                                            Kelow, Simon (1)
- 
                                                    
                                                        
                                                            
                                                            Kent, Tatiana (1)
- 
                                                    
                                                        
                                                            
                                                            Marschall, ed., Tobias (1)
- 
                                                    
                                                        
                                                            
                                                            Pandey, Palash (1)
- 
                                                    
                                                        
                                                            
                                                            Pomerantz, Richard T. (1)
- 
                                                    
                                                        
                                                            
                                                            Rosen, Gail (1)
- 
                                                    
                                                        
                                                            
                                                            Serebriiskii, Ilya G. (1)
- 
                                                    
                                                        
                                                            
                                                            Serrao, Samantha (1)
- 
                                                    
                                                        
                                                            
                                                            ValizadehAslani, Taha (1)
 
- 
                                                    
                                                        
                                                            
                                                            
- Filter by Editor
- 
                                    
                                        - 
                                                    
                                                        
                                                            
                                                            null (1)
- 
                                                    
                                                        
                                                            
                                                            & Spizer, S. M. (0)
- 
                                                    
                                                        
                                                            
                                                            & . Spizer, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ahn, J. (0)
- 
                                                    
                                                        
                                                            
                                                            & Bateiha, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Bosch, N. (0)
- 
                                                    
                                                        
                                                            
                                                            & Brennan K. (0)
- 
                                                    
                                                        
                                                            
                                                            & Brennan, K. (0)
- 
                                                    
                                                        
                                                            
                                                            & Chen, B. (0)
- 
                                                    
                                                        
                                                            
                                                            & Chen, Bodong (0)
- 
                                                    
                                                        
                                                            
                                                            & Drown, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ferretti, F. (0)
- 
                                                    
                                                        
                                                            
                                                            & Higgins, A. (0)
- 
                                                    
                                                        
                                                            
                                                            & J. Peters (0)
- 
                                                    
                                                        
                                                            
                                                            & Kali, Y. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ruiz-Arias, P.M. (0)
- 
                                                    
                                                        
                                                            
                                                            & S. Spitzer (0)
- 
                                                    
                                                        
                                                            
                                                            & Sahin. I. (0)
- 
                                                    
                                                        
                                                            
                                                            & Spitzer, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Spitzer, S.M. (0)
 
- 
                                                    
                                                        
                                                            
                                                            
- 
                                    Have feedback or suggestions for a way to improve these results?
 !
                                    
                                        
                                            Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher.
                                            Some full text articles may not yet be available without a charge during the embargo (administrative interval).
                                        
                                        
                                        
                                            
                                                
                                             What is a DOI Number?
                                        
                                    
                                
Some links on this page may take you to non-federal websites. Their policies may differ from this site.
- 
            Pandey, Palash; Arora, Sanjeevani; Rosen, Gail L.; Marschall, ed., Tobias (, Bioinformatics)Abstract MotivationThe analysis of mutational signatures is becoming increasingly common in cancer genetics, with emerging implications in cancer evolution, classification, treatment decision and prognosis. Recently, several packages have been developed for mutational signature analysis, with each using different methodology and yielding significantly different results. Because of the non-trivial differences in tools’ refitting results, researchers may desire to survey and compare the available tools, in order to objectively evaluate the results for their specific research question, such as which mutational signatures are prevalent in different cancer types. ResultsDue to the need for effective comparison of refitting mutational signatures, we introduce a user-friendly software that can aggregate and visually present results from different refitting packages. Availability and implementationMetaMutationalSigs is implemented using R and python and is available for installation using Docker and available at: https://github.com/EESI/MetaMutationalSigs.more » « less
- 
            Iqbal, Waleed; Demidova, Elena V.; Serrao, Samantha; ValizadehAslani, Taha; Rosen, Gail; Arora, Sanjeevani (, Frontiers in Genetics)null (Ed.)RRM2B plays a crucial role in DNA replication, repair and oxidative stress. While germline RRM2B mutations have been implicated in mitochondrial disorders, its relevance to cancer has not been established. Here, using TCGA studies, we investigated RRM2B alterations in cancer. We found that RRM2B is highly amplified in multiple tumor types, particularly in MYC -amplified tumors, and is associated with increased RRM2B mRNA expression. We also observed that the chromosomal region 8q22.3–8q24, is amplified in multiple tumors, and includes RRM2B , MYC along with several other cancer-associated genes. An analysis of genes within this 8q-amplicon showed that cancers that have both RRM2B -amplified along with MYC have a distinct pattern of amplification compared to cancers that are unaltered or those that have amplifications in RRM2B or MYC only. Investigation of curated biological interactions revealed that gene products of the amplified 8q22.3–8q24 region have important roles in DNA repair, DNA damage response, oxygen sensing, and apoptosis pathways and interact functionally. Notably, RRM2B -amplified cancers are characterized by mutation signatures of defective DNA repair and oxidative stress, and at least RRM2B -amplified breast cancers are associated with poor clinical outcome. These data suggest alterations in RR2MB and possibly the interacting 8q-proteins could have a profound effect on regulatory pathways such as DNA repair and cellular survival, highlighting therapeutic opportunities in these cancers.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
